SubtiBank SubtiBank
yesY [2019-06-24 10:41:47]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yesY [2019-06-24 10:41:47]

similar to rhamnogalacturonan acetylesterase
locus
BSU07070
pI
5.60
mw
24.45 kDa
protein length
217 aa Sequence Blast
gene length
654 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin]

    • Gene

    Coordinates
    774,138 774,791

    The protein

    Protein family

  • 'GDSL' lipolytic enzyme family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|585CA3154C0405697C4707E5B1D9359963999C54|YesT], [protein|D2790591E8C3B86BF91F6E1B6DADBA306D5EF758|YxiM]

    • Structure

  • [PDB|2O14] ([protein|D2790591E8C3B86BF91F6E1B6DADBA306D5EF758|YxiM], 35% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|BF0E202739BFD461E418655ECD9C3425AC556FA3|rhgR]-[gene|585CA3154C0405697C4707E5B1D9359963999C54|yesT]-[gene|E4C4AEBA8DAEF7DA1B49432213B2B3EA2AF6B34B|yesU]-[gene|8FE909876A7A21B436CA0CFB90ED190BAD17C8E1|yesV]-[gene|65704140C3B95619D6C0962CB40452D373E2740F|yesW]-[gene|217BAA94FB926CDA7CA8800BC6B08371792CEE31|yesX]-[gene|578B79EB64B804FCAACA73AB22458481371A815C|yesY]-[gene|3226901F1D7C1F21296AB974CAE3656C18BE8F69|yesZ]
    description
    [Pubmed|19651770]

    regulatory mechanism

  • [protein|BF0E202739BFD461E418655ECD9C3425AC556FA3|RhgR]: activation, [Pubmed|19651770], in [regulon|BF0E202739BFD461E418655ECD9C3425AC556FA3|RhgR regulon]

    • regulation

  • induced by pectin ([protein|search|RhgR]) [Pubmed|19651770]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B454 (yesY::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1453 NBRP B. subtilis, Japan]
  • BKE07070 ([gene|578B79EB64B804FCAACA73AB22458481371A815C|yesY]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE07070 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCATTCCTCCTCG, downstream forward: _UP4_ATCATCAAAGAAAGGTGAAA
  • BKK07070 ([gene|578B79EB64B804FCAACA73AB22458481371A815C|yesY]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK07070 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCATTCCTCCTCG, downstream forward: _UP4_ATCATCAAAGAAAGGTGAAA

    • References

  • 19651770,17449691